Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_118GntR family transcriptional regulator. (246 aa)    
Predicted Functional Partners:
GAQ93953.1
N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.844
TAGGR_120
Solute carrier family 13 protein.
     
 0.754
TAGGR_122
Na+/H+ antiporter NhaD.
 
     0.730
TAGGR_119
CBS domain-containing protein.
       0.725
GAQ94814.1
Cupin domain protein.
  
  
 0.715
GAQ94006.1
Cupin domain protein.
  
  
 0.715
TAGGR_121
Hypothetical protein.
       0.703
TAGGR_123
Nucleotide-binding universal stress protein, UspA family.
       0.648
TAGGR_124
Two-component system, response regulator YesN.
       0.635
TAGGR_125
Response regulator receiver domain-containing protein.
       0.635
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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