STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_121Hypothetical protein. (236 aa)    
Predicted Functional Partners:
TAGGR_119
CBS domain-containing protein.
 
     0.827
TAGGR_122
Na+/H+ antiporter NhaD.
 
     0.802
TAGGR_120
Solute carrier family 13 protein.
       0.766
TAGGR_22
PLD-like domain-containing protein.
  
     0.750
GAQ94692.1
Tetratricopeptide repeat-containing protein.
  
     0.744
GAQ94699.1
Tetratricopeptide repeat-containing protein.
  
     0.741
GAQ94452.1
Tetratricopeptide repeat-containing protein.
  
     0.726
TAGGR_385
Hypothetical protein.
  
     0.717
GAQ94044.1
Translocation and assembly module TamB.
  
     0.715
TAGGR_123
Nucleotide-binding universal stress protein, UspA family.
       0.714
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.