Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
TAGGR_133HAMP domain-containing protein. (486 aa)    
Predicted Functional Partners:
GAQ95047.1
Response regulator receiver domain-containing protein.
 0.948
GAQ95751.1
PAS domain S-box-containing protein.
 
 
0.919
TAGGR_130
Response regulator receiver domain-containing protein.
 
 
  0.915
GAQ94873.1
Signal transduction histidine kinase.
 
0.906
GAQ95046.1
PAS domain S-box-containing protein.
 
0.894
GAQ95291.1
PAS domain S-box-containing protein.
   
 0.890
TAGGR_132
DNA-binding transcriptional response regulator, NtrC family.
 
 
  0.882
TAGGR_116
Response regulator receiver domain-containing protein.
 
 
  0.819
GAQ95682.1
Twitching motility two-component system response regulator PilH.
 
 
  0.813
GAQ94874.1
Two-component system, cell cycle response regulator DivK.
  
  0.811
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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