STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_140Pimeloyl-[acyl-carrier protein] methyl ester esterase. (196 aa)    
Predicted Functional Partners:
TAGGR_139
Nucleotide-binding universal stress protein, UspA family.
  
    0.785
TAGGR_129
Hypothetical protein.
  
  
  0.743
GAQ94787.1
Hypothetical protein.
  
  
  0.743
TAGGR_135
ATP-dependent Lon protease.
    
  0.727
GAQ95040.1
Hypothetical protein.
  
    0.685
TAGGR_22
PLD-like domain-containing protein.
  
     0.669
GAQ95459.1
butyryl-CoA dehydrogenase.
     
 0.666
GAQ94245.1
Negative regulator of flagellin synthesis FlgM.
  
     0.658
GAQ95335.1
Hypothetical protein.
  
     0.650
GAQ94951.1
Uncharacterized membrane protein, DUF373 family.
  
     0.648
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.