STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_148Succinate dehydrogenase; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (239 aa)    
Predicted Functional Partners:
TAGGR_147
Succinate dehydrogenase.
 
 0.999
TAGGR_149
Succinate dehydrogenase.
 
 0.999
TAGGR_150
Succinate dehydrogenase.
 
 0.998
GAQ94330.1
Adenylylsulfate reductase subunit A.
  
 0.991
GAQ95022.1
Cytochrome b6-f complex iron-sulfur subunit.
 
 0.983
GAQ94100.1
Uncharacterized conserved protein YbjT.
   
 
 0.922
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
 0.921
GAQ95249.1
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain.
  
 
 0.910
GAQ95721.1
Fumarate hydratase subunit beta.
  
 
 0.894
GAQ93984.1
Dihydrolipoamide dehydrogenase.
  
 0.892
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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