STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_150Succinate dehydrogenase. (105 aa)    
Predicted Functional Partners:
TAGGR_148
Succinate dehydrogenase; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
 
 0.999
TAGGR_147
Succinate dehydrogenase.
 
 0.997
TAGGR_149
Succinate dehydrogenase.
 
  
  0.990
GAQ94330.1
Adenylylsulfate reductase subunit A.
  
 0.937
GAQ95723.1
Fumarate hydratase subunit alpha.
  
 
 0.840
GAQ95721.1
Fumarate hydratase subunit beta.
  
 
 0.834
TAGGR_151
Type IV pilus assembly protein PilC.
       0.711
TAGGR_146
Malate dehydrogenase.
  
    0.604
TAGGR_145
Branched-chain amino acid transport system substrate-binding protein.
 
     0.567
GAQ94692.1
Tetratricopeptide repeat-containing protein.
  
     0.549
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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