STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_151Type IV pilus assembly protein PilC. (403 aa)    
Predicted Functional Partners:
GAQ94488.1
Type IV pilus assembly protein PilB.
 
 
 0.959
GAQ95301.1
General secretion pathway protein E.
 
 
 0.959
GAQ95491.1
Type IV pilus assembly protein PilB.
 
 
 0.959
GAQ94942.1
Leader peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.875
GAQ95648.1
Type IV pilus assembly protein PilM.
 
 
 
 0.844
TAGGR_279
Competence protein ComEC.
   
  
 0.824
GAQ95655.1
Type IV pilus assembly protein PilA.
 
  
 0.822
GAQ94214.1
Twitching motility protein PilT.
 
  
 0.803
GAQ94215.1
Twitching motility protein PilT.
 
  
 0.803
GAQ95652.1
Type IV pilus assembly protein PilQ.
 
 
 
 0.789
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.