STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_151Type IV pilus assembly protein PilC. (403 aa)    
Predicted Functional Partners:
GAQ94488.1
Type IV pilus assembly protein PilB.
 
 
 0.968
GAQ95301.1
General secretion pathway protein E.
 
 
 0.968
GAQ95491.1
Type IV pilus assembly protein PilB.
 
 
 0.968
GAQ95648.1
Type IV pilus assembly protein PilM.
 
 
 
 0.884
GAQ94942.1
Leader peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.863
TAGGR_279
Competence protein ComEC.
   
  
 0.861
GAQ95652.1
Type IV pilus assembly protein PilQ.
 
 
 
 0.840
GAQ95655.1
Type IV pilus assembly protein PilA.
 
  
 0.823
GAQ94214.1
Twitching motility protein PilT.
 
  
 0.802
GAQ94215.1
Twitching motility protein PilT.
 
  
 0.802
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.