Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GAQ94428.1Lipopolysaccharide biosynthesis regulator YciM. (437 aa)    
Predicted Functional Partners:
GAQ94429.1
Hypothetical protein; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family.
       0.780
lpxC
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
    
 
 0.753
TAGGR_380
LPS-assembly protein.
  
   
 0.665
GAQ94692.1
Tetratricopeptide repeat-containing protein.
 
     0.650
GAQ94683.1
Tetratricopeptide repeat-containing protein.
  
  
  0.614
GAQ94699.1
Tetratricopeptide repeat-containing protein.
  
     0.599
GAQ94059.1
Doubled CXXCH domain-containing protein.
  
     0.563
GAQ95083.1
Hypothetical protein.
  
     0.530
GAQ94230.1
HEAT repeat-containing protein.
  
     0.527
GAQ95335.1
Hypothetical protein.
 
     0.523
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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