Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAQ94452.1Tetratricopeptide repeat-containing protein. (528 aa)    
Predicted Functional Partners:
GAQ95751.1
PAS domain S-box-containing protein.
 
 
 0.917
GAQ95358.1
Tetratricopeptide repeat-containing protein.
 
 
 0.853
GAQ94692.1
Tetratricopeptide repeat-containing protein.
 
  
  0.823
GAQ94450.1
Two-component system, response regulator FlrC.
   
  0.819
GAQ94453.1
Sigma-54 specific transcriptional regulator protein.
   
  0.813
GAQ94451.1
Two-component system, sensor histidine kinase FlrB.
 
     0.806
GAQ95335.1
Hypothetical protein.
  
  
  0.805
GAQ95654.1
Hypothetical protein.
  
 
  0.799
GAQ94699.1
Tetratricopeptide repeat-containing protein.
 
 
   0.791
TAGGR_22
PLD-like domain-containing protein.
  
     0.771
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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