Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GAQ94488.1Type IV pilus assembly protein PilB. (569 aa)    
Predicted Functional Partners:
TAGGR_151
Type IV pilus assembly protein PilC.
 
 
 0.959
GAQ95300.1
General secretion pathway protein F.
 
 
 0.959
GAQ94942.1
Leader peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.846
GAQ95655.1
Type IV pilus assembly protein PilA.
 
 0.809
GAQ94489.1
gAF domain-containing protein.
       0.783
GAQ94490.1
HDIG domain-containing protein.
       0.780
GAQ94491.1
Ribonuclease BN, tRNA processing enzyme.
       0.780
GAQ95475.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
  
 0.771
GAQ95476.1
Type IV pilus assembly protein PilW.
  
 0.771
GAQ95649.1
Type IV pilus assembly protein PilN.
  
 
 0.731
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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