Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GAQ94489.1gAF domain-containing protein. (358 aa)    
Predicted Functional Partners:
GAQ95233.1
Adenylate cyclase.
 
 0.968
GAQ94681.1
Adenylate cyclase.
 
 0.965
GAQ95291.1
PAS domain S-box-containing protein.
 
 0.960
GAQ94653.1
PAS domain S-box-containing protein.
 
 0.906
GAQ95047.1
Response regulator receiver domain-containing protein.
  
 0.905
GAQ95751.1
PAS domain S-box-containing protein.
   
 0.903
GAQ94873.1
Signal transduction histidine kinase.
  
 0.885
GAQ94491.1
Ribonuclease BN, tRNA processing enzyme.
 
   0.865
GAQ94577.1
HAMP domain-containing protein.
  
 
 0.862
GAQ94913.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.860
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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