Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GAQ94491.1Ribonuclease BN, tRNA processing enzyme. (254 aa)    
Predicted Functional Partners:
GAQ94489.1
gAF domain-containing protein.
 
   0.865
GAQ94490.1
HDIG domain-containing protein.
 
   0.856
GAQ94488.1
Type IV pilus assembly protein PilB.
       0.780
GAQ94681.1
Adenylate cyclase.
 
   
 0.661
GAQ95233.1
Adenylate cyclase.
 
   
 0.610
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
  
  
 0.568
GAQ94486.1
Hypothetical protein; Belongs to the UPF0434 family.
       0.552
GAQ94976.1
Outer membrane protein TolC.
  
     0.534
GAQ94682.1
FecR protein.
 
     0.475
GAQ94684.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
  
     0.466
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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