STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_171Radical SAM additional 4Fe4S-binding SPASM domain-containing protein. (402 aa)    
Predicted Functional Partners:
TAGGR_172
Metallo-beta-lactamase family protein.
       0.784
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.705
GAQ95233.1
Adenylate cyclase.
  
  
  0.673
GAQ94681.1
Adenylate cyclase.
  
  
  0.668
GAQ95291.1
PAS domain S-box-containing protein.
  
 
 0.609
TAGGR_173
Cysteine desulfurase.
  
    0.565
GAQ95751.1
PAS domain S-box-containing protein.
 
  
 0.441
moaC
Cyclic pyranopterin phosphate synthase; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.
 
  
  0.420
GAQ95047.1
Response regulator receiver domain-containing protein.
     
 0.411
TAGGR_174
Predicted arabinose efflux permease, MFS family.
       0.401
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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