Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_176Rrf2 family protein. (102 aa)    
Predicted Functional Partners:
TAGGR_173
Cysteine desulfurase.
  
 
 0.949
TAGGR_177
Cytochrome d ubiquinol oxidase subunit II.
       0.586
GAQ94445.1
Flagellar motor switch protein FliG.
    
   0.563
TAGGR_178
Cytochrome d ubiquinol oxidase subunit I.
     
 0.551
GAQ94726.1
Chorismate mutase.
      
 0.446
GAQ94178.1
Adenylyltransferase and sulfurtransferase.
    
  0.437
GAQ94473.1
Adenylyltransferase and sulfurtransferase.
    
  0.437
GAQ95419.1
Iron-sulfur cluster insertion protein; Belongs to the HesB/IscA family.
  
  
 0.417
TAGGR_186
Cysteine synthase B.
 
  
 0.404
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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