Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GAQ94632.1ABC-type uncharacterized transport system, substrate-binding protein. (333 aa)    
Predicted Functional Partners:
GAQ95047.1
Response regulator receiver domain-containing protein.
    
  0.811
GAQ94633.1
Hypothetical protein.
    
  0.810
GAQ94653.1
PAS domain S-box-containing protein.
    
  0.791
GAQ94932.1
Hypothetical protein.
  
     0.721
GAQ95335.1
Hypothetical protein.
  
     0.708
TAGGR_22
PLD-like domain-containing protein.
  
     0.707
GAQ95684.1
Chemosensory pili system protein ChpA.
 
  
  0.687
GAQ94044.1
Translocation and assembly module TamB.
  
     0.659
GAQ94692.1
Tetratricopeptide repeat-containing protein.
  
     0.655
GAQ94462.1
Hypothetical protein.
  
     0.639
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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