Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
TAGGR_190Aspartate aminotransferase. (385 aa)    
Predicted Functional Partners:
TAGGR_191
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
 
 0.944
TAGGR_285
FMN-dependent dehydrogenase.
  
 0.863
GAQ94710.1
NADPH-dependent glutamate synthase beta chain.
    
 0.859
TAGGR_186
Cysteine synthase B.
  
 
 0.789
GAQ93942.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 
  0.780
GAQ94274.1
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family.
    
  0.780
GAQ94175.1
Pyruvate carboxylase subunit B.
     
  0.767
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
  
 0.756
GAQ94927.1
Acetolactate synthase-1/2/3 large subunit.
  
 
 0.755
GAQ93966.1
ADP-ribose pyrophosphatase.
 
  
  0.745
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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