STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_193comF family protein. (218 aa)    
Predicted Functional Partners:
TAGGR_279
Competence protein ComEC.
 
  
 0.945
GAQ94065.1
DNA processing protein.
 
 
 0.892
GAQ95787.1
DNA repair protein RadC; Belongs to the UPF0758 family.
 
    0.831
GAQ95291.1
PAS domain S-box-containing protein.
  
  
 0.825
GAQ94448.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.819
GAQ94729.1
Prephenate dehydrogenase.
   
  
 0.790
TAGGR_256
Magnesium chelatase family protein.
 
  
 0.787
purA
Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
       0.784
GAQ93953.1
N-acetylglucosamine-6-phosphate deacetylase.
  
    0.783
GAQ94441.1
Hypothetical protein.
   
    0.781
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.