Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_196Hypothetical protein. (597 aa)    
Predicted Functional Partners:
GAQ94689.1
Hypothetical protein.
    
   0.776
trpF
Phosphoribosylanthranilate isomerase; Belongs to the TrpF family.
       0.775
TAGGR_198
Predicted DNA-binding protein with PD1-like DNA-binding motif.
       0.775
GAQ93935.1
Heptosyltransferase-2.
       0.773
TAGGR_199
Heptosyltransferase-1.
       0.768
TAGGR_195
Small redox-active disulfide protein 2.
       0.661
GAQ93936.1
Hypothetical protein.
       0.555
GAQ93937.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.555
TAGGR_194
Hypothetical protein.
       0.511
GAQ94373.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
     
 0.402
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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