STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAQ94784.1Hypothetical protein. (138 aa)    
Predicted Functional Partners:
GAQ94783.1
Predicted RNA-binding protein.
 
     0.954
GAQ94782.1
Lipoate-protein ligase A.
       0.755
GAQ94146.1
acetyl-CoA synthase.
 
     0.587
GAQ94144.1
acetyl-CoA decarbonylase/synthase complex subunit delta.
  
     0.556
GAQ94785.1
Pyruvate, water dikinase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.
       0.543
GAQ94145.1
acetyl-CoA decarbonylase/synthase complex subunit gamma.
  
     0.458
GAQ95493.1
Methylene-tetrahydrofolate reductase C terminal.
  
     0.435
GAQ95792.1
Methionine synthase II.
  
     0.431
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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