Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene co-occurrence
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[Homology]
Score
GAQ94797.1Diguanylate cyclase (GGDEF) domain-containing protein. (307 aa)    
Predicted Functional Partners:
GAQ94376.1
c-di-GMP-specific phosphodiesterase class I.
 
  0.983
TAGGR_342
c-di-GMP-specific phosphodiesterase class I.
 
  0.982
GAQ95291.1
PAS domain S-box-containing protein.
 
 0.957
GAQ95047.1
Response regulator receiver domain-containing protein.
  
 0.878
GAQ94798.1
HDIG domain-containing protein.
 
     0.854
GAQ94653.1
PAS domain S-box-containing protein.
 
 0.786
GAQ95751.1
PAS domain S-box-containing protein.
  
 0.782
GAQ94799.1
Hypothetical protein.
       0.780
aspS
aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
       0.734
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
  0.708
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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