STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAQ94804.1Hydrogenase-4 component F. (483 aa)    
Predicted Functional Partners:
GAQ94810.1
Ni,Fe-hydrogenase III large subunit.
 
 0.994
GAQ94806.1
Formate hydrogenlyase subunit 4.
 
 0.992
GAQ94808.1
Hydrogenase-4 component D.
 
0.984
GAQ94803.1
NADH-quinone oxidoreductase, B subunit.
 
 
 0.967
GAQ95371.1
Multicomponent Na+:H+ antiporter subunit D.
 
0.932
GAQ95013.1
NADH-quinone oxidoreductase subunit L.
 
0.931
GAQ94805.1
Hydrogenase-4 component E.
 
  
 0.902
GAQ94809.1
Hydrogenase-4 component H.
  
 0.868
GAQ94807.1
Hydrogenase-4 component B.
 
    
0.865
GAQ94802.1
Hydrogenase 3 maturation protease.
 
    0.794
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.