Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GAQ95248.1N-acetylmuramoyl-L-alanine amidase. (402 aa)    
Predicted Functional Partners:
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
 
 0.919
GAQ94897.1
LysM domain-containing protein.
 
 
 0.895
GAQ95016.1
Membrane-bound lytic murein transglycosylase D.
 
  
 0.891
GAQ95742.1
Septal ring factor EnvC.
 
 
   0.831
GAQ94834.1
N-acetylmuramoyl-L-alanine amidase.
  
  
 
0.798
GAQ95249.1
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain.
       0.780
GAQ95247.1
N-acyl-D-amino-acid deacylase.
       0.774
GAQ95244.1
Peptide chain release factor subunit 1.
       0.773
GAQ95245.1
Predicted PurR-regulated permease PerM.
       0.773
GAQ95246.1
Putative glutamine amidotransferase.
       0.773
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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