Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAQ95250.1Hypothetical protein. (286 aa)    
Predicted Functional Partners:
GAQ95646.1
Hypothetical protein.
  
     0.715
GAQ95471.1
Hypothetical protein.
  
     0.642
GAQ95244.1
Peptide chain release factor subunit 1.
 
     0.635
TAGGR_336
CRISPR-associated protein Csm5.
  
     0.599
GAQ94181.1
Hypothetical protein.
  
     0.540
TAGGR_340
CRISPR-associated protein Csm1.
  
     0.536
GAQ95245.1
Predicted PurR-regulated permease PerM.
       0.524
GAQ95246.1
Putative glutamine amidotransferase.
       0.524
GAQ95247.1
N-acyl-D-amino-acid deacylase.
       0.524
GAQ95248.1
N-acetylmuramoyl-L-alanine amidase.
       0.524
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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