Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
GAQ95272.1Aspartate aminotransferase. (392 aa)    
Predicted Functional Partners:
GAQ94726.1
Chorismate mutase.
 
 
 0.975
GAQ94710.1
NADPH-dependent glutamate synthase beta chain.
  
 
 0.891
GAQ95273.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
 0.865
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
 0.822
rplI
Large subunit ribosomal protein L9; Binds to the 23S rRNA.
 
     0.815
GAQ94175.1
Pyruvate carboxylase subunit B.
    
 0.803
GAQ95263.1
Alpha-ribazole phosphatase/probable phosphoglycerate mutase.
   
 
 0.800
GAQ94756.1
Aspartate kinase; Belongs to the aspartokinase family.
  
 
 0.798
GAQ93942.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 
 0.796
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.788
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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