Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAQ95288.1Hypothetical protein. (883 aa)    
Predicted Functional Partners:
TAGGR_177
Cytochrome d ubiquinol oxidase subunit II.
  
 0.992
GAQ95287.1
Hypothetical protein.
 
     0.947
TAGGR_178
Cytochrome d ubiquinol oxidase subunit I.
     
  0.735
GAQ95295.1
Putative zinc- or iron-chelating domain-containing protein.
 
     0.687
GAQ94872.1
Cytochrome c554 and c-prime.
  
    0.592
GAQ95289.1
Metallo-beta-lactamase superfamily protein.
       0.586
GAQ95291.1
PAS domain S-box-containing protein.
     
 0.564
GAQ95236.1
Zinc dependent phospholipase C.
  
     0.546
GAQ95030.1
ABC-type branched-chain amino acid transport system, substrate-binding protein.
  
     0.523
GAQ94922.1
Ni/Fe-hydrogenase 2 integral membrane subunit HybB.
  
     0.521
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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