STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAQ95294.1Glycolate oxidase iron-sulfur subunit. (377 aa)    
Predicted Functional Partners:
GAQ95503.1
Iron-sulfur cluster-binding protein.
 
0.972
GAQ95500.1
Glycolate oxidase.
 
 0.945
GAQ94478.1
Glycolate oxidase.
 
 0.939
GAQ94710.1
NADPH-dependent glutamate synthase beta chain.
    
 0.886
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
    
  0.837
GAQ95501.1
Glycolate oxidase iron-sulfur subunit.
  
  
 
0.825
GAQ95502.1
L-lactate dehydrogenase complex protein LldG.
 
 
 0.817
GAQ95291.1
PAS domain S-box-containing protein.
       0.797
GAQ95292.1
Radical SAM-linked protein/radical SAM family uncharacterized protein.
       0.784
GAQ95293.1
Ribonuclease G.
       0.784
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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