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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAQ95297.1Serine protease Do. (485 aa)    
Predicted Functional Partners:
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 
  0.883
GAQ94474.1
Proteasome lid subunit RPN8/RPN11.
   
  0.877
GAQ95459.1
butyryl-CoA dehydrogenase.
    
  0.875
GAQ94693.1
Caspase domain-containing protein.
  
 
  0.862
GAQ94990.1
PDZ domain-containing protein.
  
  
 
0.814
TAGGR_282
Serine protease Do.
  
  
 
0.773
GAQ95291.1
PAS domain S-box-containing protein.
     
 0.762
GAQ93966.1
ADP-ribose pyrophosphatase.
    
  0.761
GAQ95292.1
Radical SAM-linked protein/radical SAM family uncharacterized protein.
  
    0.746
GAQ95293.1
Ribonuclease G.
     
 0.735
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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