Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
GAQ95299.1General secretion pathway protein A. (274 aa)    
Predicted Functional Partners:
GAQ95302.1
MSHA biogenesis protein MshL; Belongs to the bacterial secretin family.
 
  
 0.878
GAQ95301.1
General secretion pathway protein E.
     
 0.804
GAQ95300.1
General secretion pathway protein F.
  
    0.787
GAQ95305.1
Hypothetical protein.
       0.782
GAQ95303.1
Hypothetical protein.
       0.780
GAQ95304.1
Hypothetical protein.
       0.780
GAQ95298.1
Hypothetical protein.
       0.773
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
    0.588
GAQ94448.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.563
dapA
4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
     
  0.542
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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