Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAQ95300.1General secretion pathway protein F. (403 aa)    
Predicted Functional Partners:
GAQ95301.1
General secretion pathway protein E.
 
 
 0.990
GAQ94488.1
Type IV pilus assembly protein PilB.
 
 
 0.959
GAQ95491.1
Type IV pilus assembly protein PilB.
 
 
 0.959
GAQ95302.1
MSHA biogenesis protein MshL; Belongs to the bacterial secretin family.
 
  
 0.897
GAQ94942.1
Leader peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.867
TAGGR_279
Competence protein ComEC.
   
  
 0.824
GAQ94214.1
Twitching motility protein PilT.
 
  
 0.802
GAQ94215.1
Twitching motility protein PilT.
 
  
 0.802
GAQ95655.1
Type IV pilus assembly protein PilA.
 
  
 0.799
GAQ95299.1
General secretion pathway protein A.
  
    0.787
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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