STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_219GSCFA family protein. (219 aa)    
Predicted Functional Partners:
TAGGR_227
Capsular polysaccharide transport system ATP-binding protein.
 
     0.899
TAGGR_228
Capsular polysaccharide transport system permease protein.
 
     0.894
TAGGR_226
Capsular polysaccharide transport system permease protein.
 
     0.892
TAGGR_225
SLBB domain-containing protein.
 
     0.830
TAGGR_221
Methyltransferase, FkbM family.
 
     0.782
TAGGR_220
Hypothetical protein.
       0.752
TAGGR_222
Hypothetical protein.
       0.752
TAGGR_223
Sulfotransferase family protein.
       0.752
TAGGR_224
Glycosyltransferase.
       0.752
TAGGR_28
Capsular polysaccharide export protein.
  
     0.632
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.