Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAQ95320.1Conserved hypothetical protein 698. (580 aa)    
Predicted Functional Partners:
GAQ95321.1
Hypothetical protein.
       0.775
GAQ95388.1
Sulfite exporter TauE/SafE.
 
   
 0.718
TAGGR_126
Hypothetical protein.
  
     0.654
GAQ95732.1
Uncharacterized conserved protein YutE, UPF0331/DUF86 family.
  
     0.549
GAQ94390.1
Cobaltochelatase CobN.
  
     0.534
GAQ94294.1
Hypothetical protein.
 
     0.533
GAQ94040.1
Hypothetical protein.
  
     0.513
GAQ95387.1
Hypothetical protein.
 
   
 0.505
GAQ95319.1
Hypothetical protein.
       0.464
GAQ95295.1
Putative zinc- or iron-chelating domain-containing protein.
 
     0.452
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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