Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GAQ95332.1Lipopolysaccharide export system ATP-binding protein. (244 aa)    
Predicted Functional Partners:
GAQ94204.1
Lipopolysaccharide export system permease protein.
 
 
 0.986
GAQ94203.1
Lipopolysaccharide export system permease protein.
 
 
 0.983
GAQ95333.1
Lipopolysaccharide export system protein LptA.
  
  
 0.975
GAQ95704.1
ABC-2 type transport system permease protein.
      0.884
hpf
Putative sigma-54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
  
 0.839
GAQ95331.1
RNA polymerase sigma-54 factor.
  
  
 0.836
GAQ95341.1
rfaE bifunctional protein, domain II; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.
 
  
 0.817
GAQ95329.1
UPF0042 nucleotide-binding protein; Displays ATPase and GTPase activities.
  
    0.809
GAQ95334.1
Lipopolysaccharide-assembly, LptC-related.
       0.780
lpxA
UDP-N-acetylglucosamine acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
  
 0.705
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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