STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_228Capsular polysaccharide transport system permease protein. (265 aa)    
Predicted Functional Partners:
TAGGR_227
Capsular polysaccharide transport system ATP-binding protein.
 
 0.999
TAGGR_226
Capsular polysaccharide transport system permease protein.
 
 
 0.995
TAGGR_225
SLBB domain-containing protein.
 
  
 0.992
TAGGR_28
Capsular polysaccharide export protein.
 
  
 0.968
TAGGR_219
GSCFA family protein.
 
     0.894
TAGGR_224
Glycosyltransferase.
 
  
 0.880
TAGGR_212
Glycosyltransferase, GT2 family.
 
  
 0.834
TAGGR_29
Capsular polysaccharide export protein.
 
   
 0.827
TAGGR_221
Methyltransferase, FkbM family.
       0.804
TAGGR_211
Hypothetical protein.
 
  
 0.799
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.