Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GAQ95478.1Nitroreductase. (169 aa)    
Predicted Functional Partners:
TAGGR_110
Uroporphyrinogen III methyltransferase.
  
 
 0.878
GAQ95479.1
Hypothetical protein.
       0.774
GAQ95480.1
Peptidase family M28.
  
    0.774
GAQ93950.1
Lipooligosaccharide transport system permease protein.
  
    0.681
GAQ95702.1
ABC-2 type transport system permease protein.
  
    0.681
GAQ95704.1
ABC-2 type transport system permease protein.
  
    0.681
TAGGR_365
ABC-2 type transporter, NodJ family.
  
    0.681
GAQ94710.1
NADPH-dependent glutamate synthase beta chain.
 
   
 0.635
tadA
tRNA(adenine34) deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
   
  
 0.622
GAQ94792.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
  
 
 0.510
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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