Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GAQ95480.1Peptidase family M28. (294 aa)    
Predicted Functional Partners:
GAQ95479.1
Hypothetical protein.
       0.780
GAQ95478.1
Nitroreductase.
  
    0.774
GAQ94830.1
Hypothetical protein.
    
 
 0.527
GAQ95472.1
Hypothetical protein.
       0.442
GAQ95473.1
Type IV pilus assembly protein PilY1.
       0.442
GAQ95474.1
Type IV fimbrial biogenesis protein FimT.
       0.442
GAQ95475.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
       0.442
GAQ95476.1
Type IV pilus assembly protein PilW.
       0.442
GAQ95477.1
Hypothetical protein.
       0.442
GAQ95394.1
Tetratricopeptide repeat-containing protein.
  
 
  0.405
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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