Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAQ95520.1Hypothetical protein. (112 aa)    
Predicted Functional Partners:
GAQ95519.1
Hypothetical protein.
 
     0.953
GAQ95521.1
CRISPR-associated protein Cmr4.
 
     0.953
GAQ95522.1
CRISPR-associated protein, Csx11 family.
 
     0.953
GAQ95523.1
CRISPR-associated protein Cmr2.
 
     0.949
GAQ95525.1
CRISPR-associated protein Csh1.
 
     0.806
GAQ95524.1
CRISPR-associated protein Cmr1.
       0.802
GAQ95517.1
CRISPR-associated protein Cas5h.
 
     0.799
GAQ95516.1
CRISPR-associated endonuclease/helicase Cas3.
       0.774
GAQ95518.1
CRISPR-associated protein Csh2.
       0.774
GAQ95515.1
CRISPR-associated exonuclease Cas4; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family.
 
     0.633
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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