STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_243Uncharacterized 2Fe-2 and 4Fe-4S clusters-containing protein. (631 aa)    
Predicted Functional Partners:
GAQ94144.1
acetyl-CoA decarbonylase/synthase complex subunit delta.
 
 
   0.982
GAQ94145.1
acetyl-CoA decarbonylase/synthase complex subunit gamma.
 
 
   0.981
GAQ94146.1
acetyl-CoA synthase.
 
     0.811
GAQ94143.1
5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase.
 
 
 
 0.800
GAQ95493.1
Methylene-tetrahydrofolate reductase C terminal.
 
   
 0.798
GAQ94212.1
CO dehydrogenase maturation factor.
 
     0.771
TAGGR_240
Cu2+-exporting ATPase/Cu+-exporting ATPase.
       0.681
GAQ94402.1
CO dehydrogenase maturation factor.
 
     0.679
cysS
cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.670
TAGGR_241
23S rRNA (guanosine2251-2'-O)-methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.668
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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