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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_245SapC protein. (231 aa)    
Predicted Functional Partners:
GAQ94251.1
ADP-heptose:LPS heptosyltransferase.
 
   
 0.765
GAQ94914.1
Porin; Belongs to the OprB family.
  
     0.743
GAQ94734.1
Porin; Belongs to the OprB family.
  
     0.743
GAQ95082.1
Alginate export.
  
     0.705
GAQ94726.1
Chorismate mutase.
    
  0.688
GAQ94083.1
PilZ domain-containing protein.
  
     0.660
GAQ94814.1
Cupin domain protein.
  
     0.648
GAQ94059.1
Doubled CXXCH domain-containing protein.
  
     0.639
TAGGR_246
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
       0.540
TAGGR_247
Mechanosensitive ion channel.
       0.540
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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