STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_2462-oxoglutarate ferredoxin oxidoreductase subunit alpha. (358 aa)    
Predicted Functional Partners:
GAQ94049.1
2-oxoglutarate ferredoxin oxidoreductase subunit beta.
 
 0.992
GAQ93941.1
2-oxoglutarate ferredoxin oxidoreductase subunit beta.
 
 0.987
GAQ94048.1
2-oxoglutarate ferredoxin oxidoreductase subunit gamma.
 
 0.972
GAQ95004.1
Pyruvate ferredoxin oxidoreductase beta subunit.
  
 0.969
GAQ95027.1
2-oxoglutarate ferredoxin oxidoreductase subunit delta.
 
 0.952
GAQ95002.1
Pyruvate ferredoxin oxidoreductase delta subunit.
  
 0.938
GAQ95001.1
Pyruvate ferredoxin oxidoreductase gamma subunit.
  
 0.910
GAQ93942.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
 
0.904
GAQ94710.1
NADPH-dependent glutamate synthase beta chain.
  
 
 0.898
GAQ94175.1
Pyruvate carboxylase subunit B.
    
 0.801
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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