Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GAQ95651.1Type IV pilus assembly protein PilP. (159 aa)    
Predicted Functional Partners:
GAQ95649.1
Type IV pilus assembly protein PilN.
 
  
 0.987
GAQ95652.1
Type IV pilus assembly protein PilQ.
 
 
 0.987
GAQ95650.1
Type IV pilus assembly protein PilO.
 
  
 0.976
GAQ95648.1
Type IV pilus assembly protein PilM.
 
  
 0.911
GAQ95654.1
Hypothetical protein.
 
     0.836
GAQ95653.1
DNA-binding response regulator, OmpR family.
     
 0.780
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
       0.690
TAGGR_380
LPS-assembly protein.
  
     0.645
GAQ94692.1
Tetratricopeptide repeat-containing protein.
  
   
 0.626
GAQ94131.1
Outer membrane lipoprotein carrier protein.
  
     0.621
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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