Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAQ95655.1Type IV pilus assembly protein PilA. (141 aa)    
Predicted Functional Partners:
GAQ95650.1
Type IV pilus assembly protein PilO.
 
  
 0.826
TAGGR_151
Type IV pilus assembly protein PilC.
 
  
 0.822
GAQ95652.1
Type IV pilus assembly protein PilQ.
 
   
 0.811
GAQ94488.1
Type IV pilus assembly protein PilB.
 
 0.809
GAQ95491.1
Type IV pilus assembly protein PilB.
 
 0.808
GAQ95300.1
General secretion pathway protein F.
 
  
 0.799
GAQ95301.1
General secretion pathway protein E.
 
 0.797
GAQ95648.1
Type IV pilus assembly protein PilM.
 
  
 0.788
GAQ95649.1
Type IV pilus assembly protein PilN.
 
  
 0.714
TAGGR_279
Competence protein ComEC.
  
  
 0.695
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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