STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TAGGR_320Nitrogenase molybdenum-cofactor synthesis protein NifE. (847 aa)    
Predicted Functional Partners:
nifH
Nitrogenase iron protein NifH; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
 
 0.988
TAGGR_321
Nitrogen fixation protein NifX.
 
  
 0.966
TAGGR_324
Nitrogen fixation protein NifB.
  
 0.952
TAGGR_319
Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.
 
   
0.857
TAGGR_323
Nitrogen regulatory protein PII 2; Belongs to the P(II) protein family.
  
 
 0.823
TAGGR_318
Nitrogenase molybdenum-iron protein alpha chain; Belongs to the NifD/NifK/NifE/NifN family.
 
    
0.822
TAGGR_322
Nitrogen regulatory protein PII 1; Belongs to the P(II) protein family.
  
 
 0.822
GAQ94707.1
Glutamine synthetase.
   
 
 0.473
GAQ94731.1
Rubredoxin.
   
 
 0.461
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
    
 0.440
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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