Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GAQ95724.1L-iditol 2-dehydrogenase. (335 aa)    
Predicted Functional Partners:
GAQ94710.1
NADPH-dependent glutamate synthase beta chain.
 
  
 0.833
GAQ95723.1
Fumarate hydratase subunit alpha.
       0.775
rsmI
16S rRNA (cytidine1402-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.775
GAQ93942.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.768
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
  0.710
GAQ95721.1
Fumarate hydratase subunit beta.
     
 0.703
GAQ95722.1
Predicted nuclease of the RNAse H fold, HicB family.
       0.701
GAQ94389.1
Magnesium chelatase subunit D.
   
 
 0.664
GAQ95422.1
Alcohol dehydrogenase.
 
0.645
GAQ94008.1
L-iditol 2-dehydrogenase.
  
  
 
0.611
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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