Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GAQ95727.1Diguanylate cyclase (GGDEF) domain-containing protein. (483 aa)    
Predicted Functional Partners:
GAQ95291.1
PAS domain S-box-containing protein.
 
 0.971
TAGGR_342
c-di-GMP-specific phosphodiesterase class I.
 
 
  0.920
GAQ95047.1
Response regulator receiver domain-containing protein.
 
 0.899
GAQ94376.1
c-di-GMP-specific phosphodiesterase class I.
 
 
  0.887
GAQ94875.1
Hypothetical protein.
 
 
 
 0.833
GAQ95751.1
PAS domain S-box-containing protein.
  
 0.782
GAQ94653.1
PAS domain S-box-containing protein.
 
 0.770
GAQ94490.1
HDIG domain-containing protein.
 
 0.758
GAQ94912.1
HDIG domain-containing protein.
 
 
   0.731
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
 
     0.731
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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