STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAQ95727.1Diguanylate cyclase (GGDEF) domain-containing protein. (483 aa)    
Predicted Functional Partners:
GAQ95291.1
PAS domain S-box-containing protein.
 0.977
GAQ95047.1
Response regulator receiver domain-containing protein.
 
 0.920
TAGGR_342
c-di-GMP-specific phosphodiesterase class I.
 
 0.917
GAQ94376.1
c-di-GMP-specific phosphodiesterase class I.
 
 0.883
GAQ94875.1
Hypothetical protein.
 
 
 
 0.872
GAQ95751.1
PAS domain S-box-containing protein.
  
 0.867
GAQ94490.1
HDIG domain-containing protein.
 
 0.818
GAQ94653.1
PAS domain S-box-containing protein.
 
 0.818
GAQ95709.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 
0.812
GAQ94912.1
HDIG domain-containing protein.
 
 
  0.769
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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