Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
GAQ95731.1Type I restriction enzyme R protein N terminus. (186 aa)    
Predicted Functional Partners:
GAQ95729.1
DNA methylase.
 
     0.817
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
       0.816
GAQ95728.1
Type II restriction endonuclease, TdeIII.
 
     0.815
GAQ95732.1
Uncharacterized conserved protein YutE, UPF0331/DUF86 family.
       0.773
GAQ95733.1
Hypothetical protein.
       0.773
TAGGR_129
Hypothetical protein.
  
     0.732
GAQ94241.1
Flagella basal body P-ring formation protein FlgA; Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P- ring assembly; Belongs to the FlgA family.
  
     0.704
GAQ94294.1
Hypothetical protein.
  
     0.698
GAQ94932.1
Hypothetical protein.
  
     0.697
GAQ94044.1
Translocation and assembly module TamB.
  
     0.697
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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