Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAQ95733.1Hypothetical protein. (132 aa)    
Predicted Functional Partners:
GAQ95732.1
Uncharacterized conserved protein YutE, UPF0331/DUF86 family.
   
   0.857
GAQ95728.1
Type II restriction endonuclease, TdeIII.
       0.773
GAQ95729.1
DNA methylase.
       0.773
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
       0.773
GAQ95731.1
Type I restriction enzyme R protein N terminus.
       0.773
GAQ95727.1
Diguanylate cyclase (GGDEF) domain-containing protein.
       0.689
GAQ95726.1
Hypothetical protein.
       0.634
GAQ95734.1
Methyl-accepting chemotaxis protein.
       0.468
GAQ95735.1
Regulator of protease activity HflC, stomatin/prohibitin superfamily.
       0.462
GAQ95736.1
Uncharacterized membrane protein YdjX, TVP38/TMEM64 family.
       0.462
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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