Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GAQ95754.1Ribonuclease Z. (338 aa)    
Predicted Functional Partners:
GAQ95751.1
PAS domain S-box-containing protein.
       0.565
GAQ95755.1
Two-component system, NtrC family, sensor histidine kinase HydH.
       0.535
GAQ95756.1
DNA-binding transcriptional response regulator, NtrC family.
       0.535
rny
Ribonucrease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
 
   
 0.526
GAQ95749.1
Zinc protease; Belongs to the peptidase M16 family.
  
    0.518
GAQ95750.1
Response regulator receiver domain-containing protein.
       0.506
glgA
Starch synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
       0.506
GAQ95753.1
UDPglucose--hexose-1-phosphate uridylyltransferase.
       0.506
GAQ95083.1
Hypothetical protein.
  
     0.435
GAQ95748.1
Zinc protease.
  
    0.414
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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