Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GAQ95756.1DNA-binding transcriptional response regulator, NtrC family. (427 aa)    
Predicted Functional Partners:
GAQ95751.1
PAS domain S-box-containing protein.
 
 
 0.907
GAQ95046.1
PAS domain S-box-containing protein.
 
 0.887
GAQ95047.1
Response regulator receiver domain-containing protein.
 
 0.881
GAQ95291.1
PAS domain S-box-containing protein.
  
 0.881
fliP
Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
  
  
 0.860
GAQ95755.1
Two-component system, NtrC family, sensor histidine kinase HydH.
 
 
  0.859
GAQ95331.1
RNA polymerase sigma-54 factor.
 
  
 0.791
GAQ94007.1
Methyl-accepting chemotaxis protein.
   
 
 0.773
GAQ94653.1
PAS domain S-box-containing protein.
   
 0.769
GAQ94873.1
Signal transduction histidine kinase.
  
 0.766
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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