Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
selDSelenide, water dikinase; Synthesizes selenophosphate from selenide and ATP. (305 aa)    
Predicted Functional Partners:
TAGGR_173
Cysteine desulfurase.
  
 0.957
selA
L-seryl-tRNA(Ser) seleniumtransferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.952
TAGGR_281
Selenocysteine-specific elongation factor.
 
   
 0.829
GAQ95038.1
Rhodanese-like domain-containing protein.
    
 0.750
GAQ95039.1
3-mercaptopyruvate sulfurtransferase SseA, contains two rhodanese domains.
    
 0.750
GAQ94171.1
Thioredoxin reductase.
     
 0.746
GAQ94416.1
Thioredoxin reductase.
     
 0.746
GAQ94013.1
Selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family.
 
   
 0.711
GAQ94743.1
Thioredoxin; Belongs to the thioredoxin family.
     
 0.633
GAQ95459.1
butyryl-CoA dehydrogenase.
    
   0.584
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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