Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GAQ95787.1DNA repair protein RadC; Belongs to the UPF0758 family. (224 aa)    
Predicted Functional Partners:
GAQ94320.1
Rod shape-determining protein MreC.
  
  
 0.863
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.831
GAQ95789.1
Cell fate regulator YaaT, PSP1 superfamily.
       0.802
GAQ95786.1
Hypothetical protein.
       0.737
TAGGR_193
comF family protein.
 
    0.735
GAQ95790.1
DNA polymerase-3 subunit delta'.
     
 0.723
TAGGR_279
Competence protein ComEC.
  
  
 0.712
tmk
dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.709
GAQ95792.1
Methionine synthase II.
       0.709
GAQ95793.1
Hypothetical protein.
       0.709
Your Current Organism:
Thermodesulfovibrio aggregans
NCBI taxonomy Id: 86166
Other names: DSM 17283, JCM 13213, T. aggregans, Thermodesulfovibrio aggregans Sekiguchi et al. 2008, Thermodesulfovibrio sp. TGE-P1, strain TGE-P1
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